Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102067888_102069414_R

Intron Information:

Intron Rank:

135687

Intron Class:

major

Intron Phase:

Intron Coordinates:

102067888 - 102069414

Intron Length:

1527

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAATT

5'SS Class:

strong_major

3'SS Sequence:

TTTAATAATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AATATTTTAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

84.6

33.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

73.3

0.53

66.8

42.7

Minor 5ss

-1.4

3.4

57.1

47.2

Minor BPS

0.44

1.2

67.09

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020405

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034590

102067001 - 102074542

7542