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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102069535_102074398_R

Intron Information:

Intron Rank:
135688
Intron Class:
major
Intron Phase:
Intron Coordinates:
102069535 - 102074398
Intron Length:
4864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCAAAT
U12 Branch Point Sequence:
TAGTTACTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
64.9
0.37
1.1
70.9
31.9
Major PPT
79.7
0.67
0.7
78.5
23.2
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
45.9
-0.2
2.1
66.65
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020405
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034590
102067001 - 102074542
7542