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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102204319_102296861_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102204319 - 102296861
Intron Length:
92543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTGATA
Flanking Amino Acid:
QKDFQFFKYLCCCQNPSVWI
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.3
0.7
0.9
80.1
32
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
66.8
0.52
1.1
74.7
30

Associated Gene:

Gene:
MANEA
Ensembl Gene ID:
ENSAPLG00000005108
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027740
102156004 - 102305607
149604
ENSAPLT00000005276
102203109 - 102318712
115604
ENSAPLT00000043662
102203109 - 102305607
102499
ENSAPLT00000040005
102156004 - 102300322
144319
ENSAPLT00000037955
102156004 - 102297676
141673