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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10228617_10236748_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10228617 - 10236748
Intron Length:
8132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTACCATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
GTTTTGTTACCA
Flanking Amino Acid:
MASPGSDSYIVRVKA
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.5
35.8
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
74.4
0.55
0.9
66.8
39.1
Minor 5ss
32.9
-2
3.3
44.7
43.3
Minor BPS
51.8
0.05
2.3
71.26
41.2

Associated Gene:

Gene:
SPRED2
Ensembl Gene ID:
ENSAPLG00000009387
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009778
10228600 - 10259835
31236