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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102297455_102297550_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102297455 - 102297550
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGAAT
5'SS Class:
major
3'SS Sequence:
TTTTTCTGTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAC
U12 Branch Point Sequence:
GATTGACCAATT
Flanking Amino Acid:
HMKQMLSASIVLEMSEVSKC
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
73.2
37
Major BPS
60.9
0.27
1.2
55.1
42.1
Major PPT
83.9
0.76
0.8
81.4
30.6
Minor 5ss
34.1
-1.8
3.3
45.5
43.8
Minor BPS
40.4
-0.6
2.3
60.61
42.5

Associated Gene:

Gene:
MANEA
Ensembl Gene ID:
ENSAPLG00000005108
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037955
102156004 - 102297676
141673