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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102297455_102301054_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102297455 - 102301054
Intron Length:
3600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGAAT
5'SS Class:
major
3'SS Sequence:
TTTGTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACATAATT
Flanking Amino Acid:
HMKQMLSASIGVIALSWYPP
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
73.2
37
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
34.1
-1.8
3.3
45.5
43.8
Minor BPS
61.7
0.45
1.8
83.94
36.2

Associated Gene:

Gene:
MANEA
Ensembl Gene ID:
ENSAPLG00000005108
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043662
102203109 - 102305607
102499
ENSAPLT00000027740
102156004 - 102305607
149604
ENSAPLT00000005276
102203109 - 102318712
115604