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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102301165_102303475_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102301165 - 102303475
Intron Length:
2311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCAATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTGCTTTACT
Flanking Amino Acid:
LDYAHKYNLKVTFHIEPYKD
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.5
34.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.6
0.78
0.8
81.6
34.6
Minor 5ss
38.7
-1.3
3.4
56.7
47.6
Minor BPS
64
0.52
2.1
85.16
41

Associated Gene:

Gene:
MANEA
Ensembl Gene ID:
ENSAPLG00000005108
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027740
102156004 - 102305607
149604
ENSAPLT00000005276
102203109 - 102318712
115604
ENSAPLT00000043662
102203109 - 102305607
102499