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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102304730_102318158_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102304730 - 102318158
Intron Length:
13429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCAGA
5'SS Class:
major
3'SS Sequence:
TCCCTTTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
TTGAGATAAACT
Flanking Amino Acid:
SITSFNEWHEDRRGAFGNI*
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
61.9
44.3
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
79.9
0.67
0.7
79.7
25.7
Minor 5ss
37.7
-1.4
3
49.7
46.1
Minor BPS
45.9
-0.2
2.3
69.67
46.8

Associated Gene:

Gene:
MANEA
Ensembl Gene ID:
ENSAPLG00000005108
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005276
102203109 - 102318712
115604