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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102335426_102362598_F

Intron Information:

Intron Rank:
147767
Intron Class:
major
Intron Phase:
Intron Coordinates:
102335426 - 102362598
Intron Length:
27173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TATACCACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
81.7
0.71
0.8
75.8
32.8
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
49.4
0.03
2
73.5
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029516
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035782
102334971 - 102363388
28418
ENSAPLT00000029879
102334971 - 102365131
30161