Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102362791_102364437_F

Intron Information:

Intron Rank:

147768

Intron Class:

major

Intron Phase:

Intron Coordinates:

102362791 - 102364437

Intron Length:

1647

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAAGAAA

5'SS Class:

major

3'SS Sequence:

TCTTCTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTACAT

U12 Branch Point Sequence:

TAAGACTTACAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

0.9

73.3

32.3

Major BPS

70.4

0.51

1.1

78.7

33.6

Major PPT

90.3

0.91

0.6

88.5

21.1

Minor 5ss

25.5

-2.8

29.9

43.2

Minor BPS

46.9

-0.1

64.53

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029516

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029879

102334971 - 102365131

30161