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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10238329_10240808_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10238329 - 10240808
Intron Length:
2480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGAGG
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTTTTTAAAA
Flanking Amino Acid:
VRKAIEDLIEGSTTSSSTLH
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
55.4
48.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
36.1
-1.6
3.3
48.9
46.9
Minor BPS
71
0.66
1.3
76.89
33.6

Associated Gene:

Gene:
SPRED2
Ensembl Gene ID:
ENSAPLG00000009387
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032972
10210036 - 10259835
49800
ENSAPLT00000022119
10204590 - 10259835
55246
ENSAPLT00000009778
10228600 - 10259835
31236