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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10240874_10258638_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10240874 - 10258638
Intron Length:
17765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
CCATTTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCCATTTAAAA
Flanking Amino Acid:
AEVGDDDVFTNATDSSSNSS
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
63.5
0.3
1
59.1
39.6
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
56.4
0.2
1.6
67.09
39

Associated Gene:

Gene:
SPRED2
Ensembl Gene ID:
ENSAPLG00000009387
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009778
10228600 - 10259835
31236
ENSAPLT00000032972
10210036 - 10259835
49800
ENSAPLT00000022119
10204590 - 10259835
55246