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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10258789_10259184_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10258789 - 10259184
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTCTCCATCT
Flanking Amino Acid:
YSSDHYHLEQSAPRSYRHVN
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
82.3
31.4
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
77.8
0.63
0.8
72
32.6
Minor 5ss
44.4
-0.6
3.4
64.7
41
Minor BPS
51.2
0.12
2.1
80.99
40.7

Associated Gene:

Gene:
SPRED2
Ensembl Gene ID:
ENSAPLG00000009387
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032972
10210036 - 10259835
49800
ENSAPLT00000022119
10204590 - 10259835
55246
ENSAPLT00000009778
10228600 - 10259835
31236