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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102614277_102617011_R

Intron Information:

Intron Rank:
135328
Intron Class:
major
Intron Phase:
Intron Coordinates:
102614277 - 102617011
Intron Length:
2735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCATTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GTATTTTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
77.1
33
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
73.8
0.54
1
69.9
40.4
Minor 5ss
31.1
-2.2
2.6
35.6
40.5
Minor BPS
47
-0.1
1.8
65.63
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020214
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023364
102614055 - 102617382
3328