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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102617122_102617304_R

Intron Information:

Intron Rank:
135329
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
102617122 - 102617304
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TACACACAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TCTGTCTCACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
79
0.72
1
80.3
31.7
Major PPT
55.2
0.12
1
48.4
38.2
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
45.8
-0.2
2
64.47
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020214
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023364
102614055 - 102617382
3328