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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102655677_102656232_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102655677 - 102656232
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAATTGC
5'SS Class:
major
3'SS Sequence:
TCTTTTTTCCGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAC
U12 Branch Point Sequence:
ATTTAGTCACAT
Flanking Amino Acid:
RIRGLFSAITRPTPISNLIT
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.8
39.8
Major BPS
67.1
0.43
1.2
69.3
37.7
Major PPT
67.7
0.4
1.7
76.2
37.8
Minor 5ss
40.4
-1.1
2.9
52.8
44.5
Minor BPS
40.4
-0.6
2.5
65.08
44.8

Associated Gene:

Gene:
UFL1
Ensembl Gene ID:
ENSAPLG00000005301
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005536
102650979 - 102672767
21789