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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102656292_102658691_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102656292 - 102658691
Intron Length:
2400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TGTCACTTCATT
Flanking Amino Acid:
RYGFQEHLLYSVLEELVNAG
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71.7
34.5
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
89.1
0.88
0.6
88.9
20.4
Minor 5ss
42.2
-0.9
3
62.5
42.2
Minor BPS
53.6
0.19
2
75.41
41.1

Associated Gene:

Gene:
UFL1
Ensembl Gene ID:
ENSAPLG00000005301
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005536
102650979 - 102672767
21789