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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102658839_102660011_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102658839 - 102660011
Intron Length:
1173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
GACTGTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTAAATTTAACA
Flanking Amino Acid:
DSFFKQNGYLEFDALYRLGI
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
88.9
24.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71.6
0.49
0.9
65.4
40.8
Minor 5ss
37.5
-1.4
2.8
51.2
45.3
Minor BPS
65.6
0.49
1.5
74.26
36.8

Associated Gene:

Gene:
UFL1
Ensembl Gene ID:
ENSAPLG00000005301
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005536
102650979 - 102672767
21789