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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102660188_102660881_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102660188 - 102660881
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTCTTTACCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TGTTCTTTACCC
Flanking Amino Acid:
VSSGTWIDVATLLPSSLSAE
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
66.1
0.4
1
73
31.5
Major PPT
76.8
0.6
0.8
70.6
34.8
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
70.9
0.63
1.6
78.83
36.8

Associated Gene:

Gene:
UFL1
Ensembl Gene ID:
ENSAPLG00000005301
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005536
102650979 - 102672767
21789