About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102661535_102664224_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102661535 - 102664224
Intron Length:
2690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
AATTCTCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATGCTAGAACT
Flanking Amino Acid:
KKDDRRRKATEGSGSVRGGG
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
68.8
0.42
1
60.7
40.5
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
49.2
0.02
1.8
69.62
40.9

Associated Gene:

Gene:
UFL1
Ensembl Gene ID:
ENSAPLG00000005301
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005536
102650979 - 102672767
21789