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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102669105_102669243_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102669105 - 102669243
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTTCTCTCATA
Flanking Amino Acid:
TENYSAITSEVRTKILGKLP
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
42.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
81.7
0.71
0.8
76.8
30.9
Minor 5ss
45.8
-0.4
2.6
60.7
44
Minor BPS
49.7
-0
2
67.2
40.2

Associated Gene:

Gene:
UFL1
Ensembl Gene ID:
ENSAPLG00000005301
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005536
102650979 - 102672767
21789