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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102669325_102670069_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102669325 - 102670069
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
TKLHTSLNGKSLEDFLSYLD
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
UFL1
Ensembl Gene ID:
ENSAPLG00000005301
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005536
102650979 - 102672767
21789