Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102697399_102699587_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

102697399 - 102699587

Intron Length:

2189

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGACAA

5'SS Class:

strong_major

3'SS Sequence:

ATGATTTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TTGTTTGTAATG

Flanking Amino Acid:

CFHCQKTIMPGSRKMEFKGS

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

69.6

36.5

Major BPS

84.4

0.85

1.1

34.5

Major PPT

79.5

0.66

0.9

73.5

41.1

Minor 5ss

31.4

-2.1

3.1

36.2

41.7

Minor BPS

51.4

-0

61.75

41.5

Associated Gene:

Gene:

FHL5

Ensembl Gene ID:

ENSAPLG00000005672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005874

102694000 - 102704229

10230