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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102829556_102830095_R

Intron Information:

Intron Rank:
129048
Intron Class:
major
Intron Phase:
Intron Coordinates:
102829556 - 102830095
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTACATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TATTCTACATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
81.3
0.7
0.8
78.1
34.6
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
47.1
-0.1
2
70.35
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016566
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035394
102828569 - 102830162
1594