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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102866346_102869222_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102866346 - 102869222
Intron Length:
2877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGTAC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
AGTTGATAAAAT
Flanking Amino Acid:
MPSERCLSVQEMLTGQR
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
65.1
35.3
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
90.1
0.9
0.6
89
20
Minor 5ss
42.5
-0.8
3.2
57.8
47.2
Minor BPS
44.1
-0.3
2.3
65.8
44.1

Associated Gene:

Gene:
KLHL32
Ensembl Gene ID:
ENSAPLG00000005979
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018667
102866323 - 102903253
36931
ENSAPLT00000043823
102866323 - 102890943
24621
ENSAPLT00000006211
102846042 - 102958644
112603
ENSAPLT00000040003
102846338 - 102921230
74893
ENSAPLT00000037612
102837871 - 102959245
121375
ENSAPLT00000046749
102837871 - 102958644
120774
ENSAPLT00000023612
102866323 - 102958644
92322
ENSAPLT00000044793
102837871 - 102958644
120774