Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10286916_10288116_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10286916 - 10288116

Intron Length:

1201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTATG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTCTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAA

U12 Branch Point Sequence:

ATCCTAGTAACA

Flanking Amino Acid:

VLKGDVEKLSKFKIRIEDPP

Intron Amino Acid Position:

339

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

82.1

37.7

Major BPS

0.57

1.2

77.7

37.1

Major PPT

91.3

0.93

0.5

92.5

17.5

Minor 5ss

39.8

-1.1

2.8

52.3

44.3

Minor BPS

45.7

-0.3

2.2

59.85

39.9

Associated Gene:

Gene:

ACTR2

Ensembl Gene ID:

ENSAPLG00000009440

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036036

10286745 - 10308108

21364

ENSAPLT00000009885

10286745 - 10308108

21364