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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102889276_102899351_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102889276 - 102899351
Intron Length:
10076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAC
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTTCTTTACA
Flanking Amino Acid:
QALDFAYTGQILLEPGVIQD
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
63
38.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
92
0.94
0.6
87.3
23.2
Minor 5ss
36
-1.6
3.4
49.9
46.7
Minor BPS
70.2
0.63
1.6
78.71
37.7

Associated Gene:

Gene:
KLHL32
Ensembl Gene ID:
ENSAPLG00000005979
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022766
102868560 - 102959245
90686
ENSAPLT00000044793
102837871 - 102958644
120774
ENSAPLT00000018667
102866323 - 102903253
36931
ENSAPLT00000040003
102846338 - 102921230
74893
ENSAPLT00000046749
102837871 - 102958644
120774
ENSAPLT00000006211
102846042 - 102958644
112603
ENSAPLT00000037612
102837871 - 102959245
121375
ENSAPLT00000023612
102866323 - 102958644
92322
ENSAPLT00000046261
102837871 - 102958644
120774