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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102899451_102943371_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102899451 - 102943371
Intron Length:
43921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTACTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCTAC
U12 Branch Point Sequence:
TCCCCCCTACTT
Flanking Amino Acid:
LSLCSHYLIQLAVRWLEHNC
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.6
37.3
Major BPS
43.7
-0.4
1.2
35.7
31.8
Major PPT
70.6
0.46
0.8
61.6
33.9
Minor 5ss
31.2
-2.1
3.5
46.7
48.6
Minor BPS
47.8
-0
2
65.6
45.3

Associated Gene:

Gene:
KLHL32
Ensembl Gene ID:
ENSAPLG00000005979
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044793
102837871 - 102958644
120774