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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102922431_102943371_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102922431 - 102943371
Intron Length:
20941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTACTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCTAC
U12 Branch Point Sequence:
TCCCCCCTACTT
Flanking Amino Acid:
TSLSEEQIWQLAVRWLEHNC
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
43.7
-0.4
1.2
35.7
31.8
Major PPT
70.6
0.46
0.8
61.6
33.9
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
47.8
-0
2
65.6
45.3

Associated Gene:

Gene:
KLHL32
Ensembl Gene ID:
ENSAPLG00000005979
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037612
102837871 - 102959245
121375
ENSAPLT00000023612
102866323 - 102958644
92322
ENSAPLT00000022766
102868560 - 102959245
90686
ENSAPLT00000046749
102837871 - 102958644
120774
ENSAPLT00000006211
102846042 - 102958644
112603
ENSAPLT00000046261
102837871 - 102958644
120774