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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102944099_102951948_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102944099 - 102951948
Intron Length:
7850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAAAC
5'SS Class:
major
3'SS Sequence:
AACTCTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
AAAAAATTAACT
Flanking Amino Acid:
YVVDGLLWISGGVTNTAQYQ
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
68.4
36.7
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
70.6
0.46
0.8
65
35.4
Minor 5ss
31.7
-2.1
3.3
42.3
44.8
Minor BPS
50.7
0.1
1.8
68.52
40.9

Associated Gene:

Gene:
KLHL32
Ensembl Gene ID:
ENSAPLG00000005979
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023612
102866323 - 102958644
92322
ENSAPLT00000046749
102837871 - 102958644
120774
ENSAPLT00000022766
102868560 - 102959245
90686
ENSAPLT00000046261
102837871 - 102958644
120774
ENSAPLT00000006211
102846042 - 102958644
112603
ENSAPLT00000044793
102837871 - 102958644
120774
ENSAPLT00000037612
102837871 - 102959245
121375