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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102952008_102954427_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102952008 - 102954427
Intron Length:
2420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAA
U12 Branch Point Sequence:
GCTGAGACAACT
Flanking Amino Acid:
NRLMVYDPKQNKWLSRSPML
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.4
20.6
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
88
0.85
0.8
80.2
37.3
Minor 5ss
34.8
-1.7
2.8
44.9
43.2
Minor BPS
36.7
-0.9
2.4
54.85
46.3

Associated Gene:

Gene:
KLHL32
Ensembl Gene ID:
ENSAPLG00000005979
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037612
102837871 - 102959245
121375
ENSAPLT00000023612
102866323 - 102958644
92322
ENSAPLT00000046749
102837871 - 102958644
120774
ENSAPLT00000022766
102868560 - 102959245
90686
ENSAPLT00000046261
102837871 - 102958644
120774
ENSAPLT00000006211
102846042 - 102958644
112603
ENSAPLT00000044793
102837871 - 102958644
120774