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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102954621_102956588_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102954621 - 102956588
Intron Length:
1968

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AACATTGGAAGT
Flanking Amino Acid:
WTRCSFNMLTGQNESGVAVH
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
86
0.81
0.7
85.6
29.2
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
37.1
-0.9
2
48.07
38.8

Associated Gene:

Gene:
KLHL32
Ensembl Gene ID:
ENSAPLG00000005979
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022766
102868560 - 102959245
90686
ENSAPLT00000046261
102837871 - 102958644
120774
ENSAPLT00000006211
102846042 - 102958644
112603
ENSAPLT00000044793
102837871 - 102958644
120774
ENSAPLT00000037612
102837871 - 102959245
121375
ENSAPLT00000023612
102866323 - 102958644
92322
ENSAPLT00000046749
102837871 - 102958644
120774