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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102956684_102958482_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102956684 - 102958482
Intron Length:
1799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTTTCTGTACTT
Flanking Amino Acid:
WTNEPLACIQVLDVSKEGKE
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
22.3
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
77.7
0.62
0.9
70.5
35.2
Minor 5ss
28.9
-2.4
3.2
39.6
46.4
Minor BPS
56.1
0.27
2.2
82.98
39.3

Associated Gene:

Gene:
KLHL32
Ensembl Gene ID:
ENSAPLG00000005979
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037612
102837871 - 102959245
121375
ENSAPLT00000023612
102866323 - 102958644
92322
ENSAPLT00000046749
102837871 - 102958644
120774
ENSAPLT00000022766
102868560 - 102959245
90686
ENSAPLT00000046261
102837871 - 102958644
120774
ENSAPLT00000006211
102846042 - 102958644
112603
ENSAPLT00000044793
102837871 - 102958644
120774