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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10296692_10298637_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10296692 - 10298637
Intron Length:
1946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TAAAACTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTTTATTAAAA
Flanking Amino Acid:
NIEIKNNKKMDLMVGDEASE
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
70.4
0.46
1
62.5
43.3
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
62.7
0.39
1.7
73.41
38.1

Associated Gene:

Gene:
ACTR2
Ensembl Gene ID:
ENSAPLG00000009440
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036036
10286745 - 10308108
21364