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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102983941_102986203_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102983941 - 102986203
Intron Length:
2263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
TCTTTTTCAACA
Flanking Amino Acid:
EGLQLTYWIIGCLVKNWAAI
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
67.6
0.44
1.2
75
40
Major PPT
83.9
0.76
0.8
81.1
29.5
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
66.6
0.52
1.5
74.67
37.4

Associated Gene:

Gene:
MMS22L
Ensembl Gene ID:
ENSAPLG00000006108
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006336
102973373 - 103062614
89242