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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_102986364_102986515_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102986364 - 102986515
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTCAATC
Flanking Amino Acid:
PKNALVQFIKAVGRTYSGLQ
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
63
38.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.9
0.88
0.7
88.2
29.1
Minor 5ss
36
-1.6
3.4
49.9
46.7
Minor BPS
59.5
0.28
1.5
70.64
34.9

Associated Gene:

Gene:
MMS22L
Ensembl Gene ID:
ENSAPLG00000006108
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006336
102973373 - 103062614
89242