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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10298653_10302322_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10298653 - 10302322
Intron Length:
3670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
CCCGTTGAAGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTTCTTCACC
Flanking Amino Acid:
TAKVGNIEIKNNKKMDLMVG
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
54.6
0.1
1
50.7
37.1
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
68.9
0.58
1.7
77.35
39.1

Associated Gene:

Gene:
ACTR2
Ensembl Gene ID:
ENSAPLG00000009440
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036036
10286745 - 10308108
21364