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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103028635_103028989_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103028635 - 103028989
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TCTTATTTACTT
Flanking Amino Acid:
ILWDYYSKNLNSCFTVPWLG
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
57.7
0.32
1.8
76.08
41.4

Associated Gene:

Gene:
MMS22L
Ensembl Gene ID:
ENSAPLG00000006108
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006336
102973373 - 103062614
89242