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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103036287_103041734_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103036287 - 103041734
Intron Length:
5448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CATTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TAGTCATTATTT
Flanking Amino Acid:
FDRNGDLDEKKRKESNWKFV
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.9
30.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.8
0.76
0.8
80.8
36.1
Minor 5ss
33.9
-1.8
2.8
41.5
45.1
Minor BPS
56.4
0.28
1.9
74.37
42.5

Associated Gene:

Gene:
MMS22L
Ensembl Gene ID:
ENSAPLG00000006108
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006336
102973373 - 103062614
89242