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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103047264_103049200_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103047264 - 103049200
Intron Length:
1937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
ATTTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATCT
Flanking Amino Acid:
ILHVLGEKMMRQVVYANNFI
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.6
0.76
0.8
82
34.8
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
63.9
0.52
1.8
83.32
37.6

Associated Gene:

Gene:
MMS22L
Ensembl Gene ID:
ENSAPLG00000006108
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006336
102973373 - 103062614
89242