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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103107168_103130148_F

Intron Information:

Intron Rank:
139960
Intron Class:
major
Intron Phase:
Intron Coordinates:
103107168 - 103130148
Intron Length:
22981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCGCA
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGTTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
66
40.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
32
-2.1
3.2
39.7
45.8
Minor BPS
60.1
0.4
1.5
74.2
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025239
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030686
103065322 - 103130203
64882