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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103107168_103130534_F

Intron Information:

Intron Rank:
139966
Intron Class:
major
Intron Phase:
Intron Coordinates:
103107168 - 103130534
Intron Length:
23367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCGCA
5'SS Class:
major
3'SS Sequence:
TCTATTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATTCTACAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
66
40.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
82.9
0.74
0.8
76.7
32
Minor 5ss
32
-2.1
3.2
39.7
45.8
Minor BPS
52.9
0.17
1.8
73.03
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025239
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047351
103065322 - 103130717
65396