Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103285773_103301201_F

Intron Information:

Intron Rank:

130314

Intron Class:

major

Intron Phase:

Intron Coordinates:

103285773 - 103301201

Intron Length:

15429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGATGG

5'SS Class:

major

3'SS Sequence:

TTCTGCCATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTAAA

U12 Branch Point Sequence:

GCTATCTAAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

63.4

43.8

Major BPS

76.5

0.66

0.8

75.9

24.9

Major PPT

75.9

0.58

0.9

70.1

35.5

Minor 5ss

35.9

-1.6

3.3

47.1

48.3

Minor BPS

49.4

0.04

1.8

66.18

44.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020103

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047899

103285590 - 103302676

17087