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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103334287_103337902_F

Intron Information:

Intron Rank:
136493
Intron Class:
major
Intron Phase:
Intron Coordinates:
103334287 - 103337902
Intron Length:
3616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
100
1.24
0.5
100
0
Major PPT
78.5
0.64
1
75.6
38.2
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
63.3
0.41
1.3
70.03
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023541
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036442
103334160 - 103338584
4425