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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103337991_103338499_F

Intron Information:

Intron Rank:
136494
Intron Class:
major
Intron Phase:
Intron Coordinates:
103337991 - 103338499
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAATTAA
5'SS Class:
major
3'SS Sequence:
TGTCTTCCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTCTCTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
73.9
32.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.9
0.65
0.8
73.5
31.7
Minor 5ss
39.3
-1.2
2.9
49.3
47
Minor BPS
74.7
0.76
1.1
74.58
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023541
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036442
103334160 - 103338584
4425