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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10336343_10341666_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10336343 - 10341666
Intron Length:
5324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TTTCTCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TTGTCACTAAGT
Flanking Amino Acid:
MSSMNPEYDYLFKLLLI
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
61.3
37.5
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
87
0.83
0.7
81.7
23.1
Minor 5ss
29.4
-2.4
3.1
34.2
36.2
Minor BPS
51
0.11
2.2
77.96
44

Associated Gene:

Gene:
RAB1A
Ensembl Gene ID:
ENSAPLG00000018342
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022112
10336320 - 10347713
11394