About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103413973_103427308_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103413973 - 103427308
Intron Length:
13336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTTTGCCT
Flanking Amino Acid:
LRKFIFKDEERTRVKLESLE
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
87
0.83
0.8
81.7
30.4
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
TRIB2
Ensembl Gene ID:
ENSAPLG00000013170
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013717
103408318 - 103428401
20084