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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103438659_103439784_R

Intron Information:

Intron Rank:
140452
Intron Class:
major
Intron Phase:
Intron Coordinates:
103438659 - 103439784
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
90.9
28.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
81.9
0.72
0.8
78.3
29.1
Minor 5ss
47.2
-0.3
2.7
68.8
41.8
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022953
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021560
103438399 - 103442332
3934