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Intron Name: Anas_platyrhynchos_platyrhynchos_3_10343967_10345384_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10343967 - 10345384

Intron Length:

1418

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAGTAGT

5'SS Class:

major

3'SS Sequence:

GTTTGCCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTGAC

U12 Branch Point Sequence:

CCTGCAGTAACT

Flanking Amino Acid:

LDGKTIKLQIWDTAGQERFR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

77.3

37.6

Major BPS

64.8

0.37

0.9

55.1

32.8

Major PPT

80.8

0.69

0.9

73.7

36.9

Minor 5ss

39.3

-1.2

2.8

53.1

38.8

Minor BPS

47.1

-0.1

2.3

68.33

48.3

Associated Gene:

Gene:

RAB1A

Ensembl Gene ID:

ENSAPLG00000018342

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022112

10336320 - 10347713

11394

ENSAPLT00000038975

10341131 - 10347713

6583