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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103515764_103518593_R

Intron Information:

Intron Rank:
132891
Intron Class:
major
Intron Phase:
Intron Coordinates:
103515764 - 103518593
Intron Length:
2830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TATTTTTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75
0.56
1
69.2
41.8
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
65.9
0.48
1.6
74.61
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020882
103515664 - 103521540
5877